Function reference • ADTnorm

All functions
`ADTnorm()`	ADTnorm normalization to remove the technical variations across samples for each ADT marker.
`arcsinh_transform()`	arcsinh transformation.
`cell_x_adt`	A matrix of raw count for the cell by ADT markers
`cell_x_feature`	A matrix of raw count for the cell by features
`clean_adt_name()`	Clean ADT marker name
`detect_impute_outlier_valley()`	Identify the valley outliers and impute by valley by closet neighbors.
`get_customize_landmark()`	Prompt Shiny browser to manually customize peaks and valleys locations.
`get_neighbors()`	Find the closest neighbors to impute outlier valleys.
`get_peak_midpoint()`	Get the peak landmarks location using the peak region midpoint
`get_peak_mode()`	Get the peak landmarks location using the peak mode
`get_valley_location()`	Get the valley landmark locations.
`landmark_fill_na()`	Merge locations of peak and valley landmarks
`load_landmarks()`	Load saved landmarks into a list of matrices, as required for input into "override_landmark".
`peak_alignment()`	Align the peak and valley landmarks by the warpset function
`plot_adt_density_each()`	Plot the expression density profile for ONE ADT marker
`plot_adt_density_with_peak_valley()`	Plot ADT marker expression density profile with identified peak and valley locations
`plot_adt_density_with_peak_valley_each()`	Plot the expression density profile for ONE ADT marker with identified peak and valley locations

Reference