Plot the expression density profile for ONE ADT marker

This function plots the ADT expression density profile for only one ADT marker. Each track is a sample. Color by batch

plot_adt_density_each(
  adt_count,
  cell_x_feature,
  brewer_palettes,
  parameter_list = NULL
)

Arguments

adt_count

Matrix of ADT raw counts in cells (rows) by one target ADT marker (column) format.

cell_x_feature

Matrix of cells (rows) by cell features (columns) such as cell type, sample, and batch-related information.

brewer_palettes

Set the color scheme of the color brewer.

parameter_list

Users can specify: "run_label" to give a name for this run; "bw" to adjust the bandwidth of the density plot.

Examples

if (FALSE) {
plot_adt_density_each(
 cell_x_adt,
 cell_x_feature,
 brewer_palettes = "Set1",
 parameter_list = list(bw = 0.1, run_label = "ADTnorm")
)
}