About

Last updated: 2020-08-10

Checks: 2 0

Knit directory: CUTTag_tutorial/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 438c1a5

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 438c1a5. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store

Untracked files:
    Untracked:  ._.DS_Store
    Untracked:  alignment/
    Untracked:  analysis/figures/CUTTag_Tuto_Diagram.png
    Untracked:  data/IgG_old/
    Untracked:  data/IgG_rep1/
    Untracked:  data/IgG_rep2/
    Untracked:  data/K27me3_rep1/
    Untracked:  data/K27me3_rep2/
    Untracked:  data/K4me3_rep1/
    Untracked:  data/K4me3_rep2/
    Untracked:  data/hg38_gene/
    Untracked:  fastq/
    Untracked:  fastqFileQC/
    Untracked:  peakCalling/

Unstaged changes:
    Deleted:    analysis/figures/CUTTag_Diagram.png

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	5f6455d	yezhengSTAT	2020-08-10	Build site.
html	8adffb5	yezhengSTAT	2020-07-17	Build site.
html	7a2792a	yezhengSTAT	2020-07-16	Build site.
html	5346b8e	yezhengSTAT	2020-06-07	Build site.
html	8db752d	yezhengSTAT	2020-06-01	Build site.
Rmd	cbd9c8c	yezhengSTAT	2020-06-01	Publish the initial files for myproject
html	2e55365	yezhengSTAT	2020-06-01	Build site.
Rmd	a678360	yezhengSTAT	2020-06-01	Publish the initial files for myproject
html	d544756	yezhengSTAT	2020-06-01	Build site.
Rmd	d37def8	yezhengSTAT	2020-04-15	Start workflowr project.